Package: healthyR.ts 0.3.0.9000

healthyR.ts: The Time Series Modeling Companion to 'healthyR'

Hospital time series data analysis workflow tools, modeling, and automations. This library provides many useful tools to review common administrative time series hospital data. Some of these include average length of stay, and readmission rates. The aim is to provide a simple and consistent verb framework that takes the guesswork out of everything.

Authors:Steven Sanderson [aut, cre, cph]

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healthyR.ts.pdf |healthyR.ts.html✨
healthyR.ts/json (API)
NEWS

# Install 'healthyR.ts' in R:

install.packages('healthyR.ts', repos = c('https://spsanderson.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/spsanderson/healthyr.ts/issues

On CRAN:

ai arima-forecasting arima-model ets forecasting ggplot2 machine-learning modeling prophet time-series time-series-analysis workflows

100 exports 18 stars 7.84 score 189 dependencies 1 dependents 48 scripts 626 downloads

Last updated 27 days agofrom:3fbc89f5c8. Checks:OK: 7. Indexed: yes.

Target	Result	Date
Doc / Vignettes	OK	Sep 11 2024
R-4.5-win	OK	Sep 11 2024
R-4.5-linux	OK	Sep 11 2024
R-4.4-win	OK	Sep 11 2024
R-4.4-mac	OK	Sep 11 2024
R-4.3-win	OK	Sep 11 2024
R-4.3-mac	OK	Sep 11 2024

Exports::=.data %>%arima_string as_label as_name assign_value auto_stationarize calibrate_and_plot chr_assign ci_hi ci_lo color_blind enquo enquos expr get_recipe_call internal_ts_backward_event_tbl internal_ts_both_event_tbl internal_ts_forward_event_tbl model_extraction_helper required_pkgs.step_ts_acceleration required_pkgs.step_ts_velocity step_ts_acceleration step_ts_velocity sym syms tidy_fft ts_acceleration_augment ts_acceleration_vec ts_adf_test ts_arima_simulator ts_auto_arima ts_auto_arima_xgboost ts_auto_croston ts_auto_exp_smoothing ts_auto_glmnet ts_auto_lm ts_auto_mars ts_auto_nnetar ts_auto_prophet_boost ts_auto_prophet_reg ts_auto_recipe ts_auto_smooth_es ts_auto_svm_poly ts_auto_svm_rbf ts_auto_theta ts_auto_xgboost ts_brownian_motion ts_brownian_motion_augment ts_brownian_motion_plot ts_calendar_heatmap_plot ts_compare_data ts_event_analysis_plot ts_extract_auto_fitted_workflow ts_feature_cluster ts_feature_cluster_plot ts_forecast_simulator ts_geometric_brownian_motion ts_geometric_brownian_motion_augment ts_get_date_columns ts_growth_rate_augment ts_growth_rate_vec ts_info_tbl ts_is_date_class ts_lag_correlation ts_ma_plot ts_model_auto_tune ts_model_compare ts_model_rank_tbl ts_model_spec_tune_template ts_qc_run_chart ts_qq_plot ts_random_walk ts_random_walk_ggplot_layers ts_scale_color_colorblind ts_scale_fill_colorblind ts_scedacity_scatter_plot ts_sma_plot ts_splits_plot ts_time_event_analysis_tbl ts_to_tbl ts_velocity_augment ts_velocity_vec ts_vva_plot ts_wfs_arima_boost ts_wfs_auto_arima ts_wfs_ets_reg ts_wfs_lin_reg ts_wfs_mars ts_wfs_nnetar_reg ts_wfs_prophet_reg ts_wfs_svm_poly ts_wfs_svm_rbf ts_wfs_xgboost util_difflog_ts util_doublediff_ts util_doubledifflog_ts util_log_ts util_singlediff_ts

Dependencies:abind anytime askpass backports base64enc BH bigD bit bit64 bitops broom bslib cachem callr checkmate class cli clipr clock codetools colorspace commonmark conflicted cowplot cpp11 crayon crosstalk curl data.table desc diagram dials DiceDesign digest distributional doFuture doParallel dplyr dygraphs evaluate extraDistr fansi farver fastmap fontawesome forcats foreach forecast fracdiff fs furrr future future.apply generics ggplot2 globals glue gower GPfit gridExtra gt gtable hardhat highr hms htmltools htmlwidgets httr infer inline ipred isoband iterators janitor jquerylib jsonlite juicyjuice KernSmooth knitr labeling later lattice lava lazyeval lhs lifecycle listenv lmtest loo lubridate magrittr markdown MASS Matrix matrixStats memoise mgcv mime modeldata modelenv modeltime munsell nlme nnet numDeriv openssl padr parallelly parsnip patchwork pillar pkgbuild pkgconfig plotly posterior prettyunits processx prodlim progress progressr promises prophet ps purrr quadprog quantmod QuickJSR R6 rappdirs RColorBrewer Rcpp RcppArmadillo RcppEigen RcppParallel RcppRoll reactable reactR readr recipes rlang rmarkdown rpart rsample rstan rstantools rstudioapi sass scales sfd shape slider snakecase SQUAREM StanHeaders stringi stringr survival sys tensorA tibble tidymodels tidyr tidyselect timechange timeDate timetk tinytex tseries tsfeatures TTR tune tzdb urca utf8 V8 vctrs viridisLite vroom warp withr workflows workflowsets xfun xgboost xml2 xts yaml yardstick zoo

Getting Started with healthyR.ts

Steven P. Sanderson II, MPH

Rendered fromgetting-started.Rmdusingknitr::rmarkdownon Sep 11 2024.

Last update: 2022-03-17
Started: 2020-12-05

Using Tidy FFT

Steven P. Sanderson II, MPH

Rendered fromusing-tidy-fft.Rmdusingknitr::rmarkdownon Sep 11 2024.

Last update: 2022-06-08
Started: 2021-09-24

Citation

Development and contributors

Readme and manuals

Help Manual

Help page	Topics
Automatically Stationarize Time Series Data	auto_stationarize
Helper function - Calibrate and Plot	calibrate_and_plot
Confidence Interval Generic	ci_hi
Confidence Interval Generic	ci_lo
Provide Colorblind Compliant Colors	color_blind
Event Analysis	internal_ts_backward_event_tbl
Event Analysis	internal_ts_both_event_tbl
Event Analysis	internal_ts_forward_event_tbl
Model Method Extraction Helper	model_extraction_helper
Recipes Time Series Acceleration Generator	step_ts_acceleration
Recipes Time Series velocity Generator	step_ts_velocity
Tidy Style FFT	tidy_fft
Augment Function Acceleration	ts_acceleration_augment
Vector Function Time Series Acceleration	ts_acceleration_vec
Augmented Dickey-Fuller Test for Time Series Stationarity	ts_adf_test
Simulate ARIMA Model	ts_arima_simulator
Boilerplate Workflow	ts_auto_arima
Boilerplate Workflow	ts_auto_arima_xgboost
Boilerplate Workflow	ts_auto_croston
Boilerplate Workflow	ts_auto_exp_smoothing
Boilerplate Workflow	ts_auto_glmnet
Boilerplate Workflow	ts_auto_lm
Boilerplate Workflow	ts_auto_mars
Boilerplate Workflow	ts_auto_nnetar
Boilerplate Workflow	ts_auto_prophet_boost
Boilerplate Workflow	ts_auto_prophet_reg
Build a Time Series Recipe	ts_auto_recipe
Boilerplate Workflow	ts_auto_smooth_es
Boilerplate Workflow	ts_auto_svm_poly
Boilerplate Workflow	ts_auto_svm_rbf
Boilerplate Workflow	ts_auto_theta
Boilerplate Workflow	ts_auto_xgboost
Brownian Motion	ts_brownian_motion
Brownian Motion	ts_brownian_motion_augment
Auto-Plot a Geometric/Brownian Motion Augment	ts_brownian_motion_plot
Time Series Calendar Heatmap	ts_calendar_heatmap_plot
Compare data over time periods	ts_compare_data
Time Series Event Analysis Plot	ts_event_analysis_plot
Extract Boilerplate Items	ts_extract_auto_fitted_workflow
Time Series Feature Clustering	ts_feature_cluster
Time Series Feature Clustering	ts_feature_cluster_plot
Time-series Forecasting Simulator	ts_forecast_simulator
Geometric Brownian Motion	ts_geometric_brownian_motion
Geometric Brownian Motion	ts_geometric_brownian_motion_augment
Get date or datetime variables (column names)	ts_get_date_columns
Augment Data with Time Series Growth Rates	ts_growth_rate_augment
Vector Function Time Series Growth Rate	ts_growth_rate_vec
Get Time Series Information	ts_info_tbl
Check if an object is a date class	ts_is_date_class
Time Series Lag Correlation Analysis	ts_lag_correlation
Time Series Moving Average Plot	ts_ma_plot
Time Series Model Tuner	ts_model_auto_tune
Compare Two Time Series Models	ts_model_compare
Model Rank	ts_model_rank_tbl
Time Series Model Spec Template	ts_model_spec_tune_template
Quality Control Run Chart	ts_qc_run_chart
Time Series Model QQ Plot	ts_qq_plot
Random Walk Function	ts_random_walk
Get Random Walk 'ggplot2' layers	ts_random_walk_ggplot_layers
Provide Colorblind Compliant Colors	ts_scale_color_colorblind
Provide Colorblind Compliant Colors	ts_scale_fill_colorblind
Time Series Model Scedacity Plot	ts_scedacity_scatter_plot
Simple Moving Average Plot	ts_sma_plot
Time Series Splits Plot	ts_splits_plot
Event Analysis	ts_time_event_analysis_tbl
Coerce a time-series object to a tibble	ts_to_tbl
Augment Function Velocity	ts_velocity_augment
Vector Function Time Series Acceleration	ts_velocity_vec
Time Series Value, Velocity and Acceleration Plot	ts_vva_plot
Auto Arima XGBoost Workflowset Function	ts_wfs_arima_boost
Auto Arima (Forecast auto_arima) Workflowset Function	ts_wfs_auto_arima
Auto ETS Workflowset Function	ts_wfs_ets_reg
Auto Linear Regression Workflowset Function	ts_wfs_lin_reg
Auto MARS (Earth) Workflowset Function	ts_wfs_mars
Auto NNETAR Workflowset Function	ts_wfs_nnetar_reg
Auto PROPHET Regression Workflowset Function	ts_wfs_prophet_reg
Auto SVM Poly (Kernlab) Workflowset Function	ts_wfs_svm_poly
Auto SVM RBF (Kernlab) Workflowset Function	ts_wfs_svm_rbf
Auto XGBoost (XGBoost) Workflowset Function	ts_wfs_xgboost
Differencing with Log Transformation to Make Time Series Stationary	util_difflog_ts
Double Differencing to Make Time Series Stationary	util_doublediff_ts
Double Differencing with Log Transformation to Make Time Series Stationary	util_doubledifflog_ts
Logarithmic Transformation to Make Time Series Stationary	util_log_ts
Single Differencing to Make Time Series Stationary	util_singlediff_ts